[Rosetta@Home] hitparade van 21 juni

[Kristof]

Weeral donderdag vandaag. Voor ondergetekende de laatste werkdag (want ik heb voor morgen een dagje extra verlof gevraagd ). Als er dus morgen zich een andere statsposter kan aanbieden?

Vandaag zien we dat MetalMike een uitval doet, en zich op de 2de plaats daily weet neer te zetten.
Ook zien we nog 2 nieuwe members zich aanbiden, met name Com@Home en garwaiyau. Welkom
In de lijst van de 7 mijlpalen, zien we bovenaan B&B de grens van 100k voorbij is. Nog 10 keer deze score, en je krijgt je eerste meloen

Er is ook nog mooi projectnieuws van David, maar dit zal ik onder de stats neerpoten

Iedereen alvast een goed weekend gewenst


[Rosetta@Home] hitparade van 21 juni 2006

Subteams Daily Top 30
pos		daily	user	total		procent
1.	()	32.520,70	[DPC]FOKschaap	3.969.115,00	(2)	15,2 %
2.	( 8)	23.935,00	MetalMike	497.337,89	(11)	11,2 %
3.	( 1)	19.191,50	Cureseekers	4.333.078,48	(1)	9,0 %
4.	( 2)	13.760,00	Los Alcoholicos	3.236.329,45	(3)	6,5 %
5.	( 1)	9.769,13	[DPC]TeamHC	453.296,89	(13)	4,6 %
6.	( 1)	8.473,84	Grutte Pier [Wa Oars]	2.109.474,82	(5)	4,0 %
7.	( 4)	7.827,65	[DPC] Team ColdFusion	1.133.376,56	(6)	3,7 %
8.	( 1)	6.020,06	borkescomputers	432.380,64	(14)	2,8 %
9.	( 1)	5.888,76	Team_Elteor_Borislavj	2.175.020,70	(4)	2,8 %
10.	( 1)	4.996,84	DPC_Schotse_Hooglanders	233.422,85	(25)	2,3 %
11.	( 2)	4.303,40	TeamBVD	579.981,55	(10)	2,0 %
12.	()	3.458,68	Team_Gaol	832.893,49	(8)	1,6 %
13.	( 1)	3.331,18	Tukkertje	425.372,27	(15)	1,6 %
14.	( 4)	2.921,93	Cosmic Cows	364.554,00	(17)	1,4 %
15.	( 2)	2.755,09	[DPC]Division_Brabant	316.574,88	(20)	1,3 %
16.	( 1)	2.492,00	MolAnO	228.127,85	(26)	1,2 %
17.	( 1)	2.418,07	Patman	249.020,18	(24)	1,1 %
18.	( 2)	2.389,99	Mbc	307.098,75	(22)	1,1 %
19.	( 5)	2.184,27	Basjes	119.282,17	(41)	1,0 %
20.	( 1)	2.086,36	Markosoft	95.966,44	(53)	1,0 %
21.	( 1)	2.053,51	Grimburgoth	103.203,44	(49)	1,0 %
22.	( 5)	1.924,45	Dutch Power Chicken	376.507,87	(16)	0,9 %
23.	( 2)	1.720,72	Creative ID	121.120,47	(40)	0,8 %
24.	( 6)	1.683,34	Team_Bitstorm	105.029,20	(46)	0,8 %
25.	( 2)	1.543,66	[DPC] C0w Crunch3rz	107.111,37	(43)	0,7 %
26.	()	1.524,60	AJSL	359.513,71	(18)	0,7 %
27.	( 1)	1.475,57	NoizyCows	455.152,22	(12)	0,7 %
28.	( 5)	1.449,54	B&B	100.186,80	(51)	0,7 %
29.	( 79)	1.425,41	Sybr_E-N	52.154,18	(74)	0,7 %
30.	( 1)	1.337,07	Fiestaclub.nl	128.490,69	(39)	0,6 %
More...

Subteams Overall Top 30
pos		overall	user	daily		procent
1.	()	4.333.078,48	Cureseekers	19.191,50	(3)	12,5 %
2.	()	3.969.115,00	[DPC]FOKschaap	32.520,70	(1)	11,5 %
3.	()	3.236.329,45	Los Alcoholicos	13.760,00	(4)	9,3 %
4.	()	2.175.020,70	Team_Elteor_Borislavj	5.888,76	(9)	6,3 %
5.	()	2.109.474,82	Grutte Pier [Wa Oars]	8.473,84	(6)	6,1 %
6.	()	1.133.376,56	[DPC] Team ColdFusion	7.827,65	(7)	3,3 %
7.	()	1.025.409,45	BurnHard	193,18	(86)	3,0 %
8.	()	832.893,49	Team_Gaol	3.458,68	(12)	2,4 %
9.	()	734.270,65	[DPC]Team Switch	1.084,93	(39)	2,1 %
10.	()	579.981,55	TeamBVD	4.303,40	(11)	1,7 %
11.	()	497.337,89	MetalMike	23.935,00	(2)	1,4 %
12.	()	455.152,22	NoizyCows	1.475,57	(27)	1,3 %
13.	()	453.296,89	[DPC]TeamHC	9.769,13	(5)	1,3 %
14.	()	432.380,64	borkescomputers	6.020,06	(8)	1,2 %
15.	()	425.372,27	Tukkertje	3.331,18	(13)	1,2 %
16.	()	376.507,87	Dutch Power Chicken	1.924,45	(22)	1,1 %
17.	()	364.554,00	Cosmic Cows	2.921,93	(14)	1,1 %
18.	()	359.513,71	AJSL	1.524,60	(26)	1,0 %
19.	()	318.975,82	JZ-power	1.163,89	(35)	0,9 %
20.	()	316.574,88	[DPC]Division_Brabant	2.755,09	(15)	0,9 %
21.	()	310.587,45	M_P_G	1.284,34	(32)	0,9 %
22.	()	307.098,75	Mbc	2.389,99	(18)	0,9 %
23.	()	261.699,10	[DPC]NGS	0,00	(571)	0,8 %
24.	()	249.020,18	Patman	2.418,07	(17)	0,7 %
25.	()	233.422,85	DPC_Schotse_Hooglanders	4.996,84	(10)	0,7 %
26.	()	228.127,85	MolAnO	2.492,00	(16)	0,7 %
27.	()	197.525,52	Selwerd	0,00	(442)	0,6 %
28.	()	194.141,83	trenza	1.126,73	(37)	0,6 %
29.	()	192.439,55	[DPC]Happy Hour	114,82	(99)	0,6 %
30.	()	189.625,94	[DPC] De7geitjes	604,60	(50)	0,5 %
More...

Teams Daily Top 15
pos		daily	team	total		procent
1.	()	512.408,00	XtremeSystems	41.502.564,04	(1)	21,8 %
2.	()	257.067,00	Free-DC	40.685.619,90	(2)	10,9 %
3.	()	213.172,00	Dutch Power Cows	34.758.806,14	(3)	9,1 %
4.	()	117.111,00	TeAm AnandTech	17.691.050,44	(4)	5,0 %
5.	( 1)	60.565,80	Canada	6.614.062,20	(6)	2,6 %
6.	( 1)	53.027,90	XPC	12.457.870,91	(5)	2,3 %
7.	( 1)	49.614,30	Team MacNN	3.686.832,37	(14)	2,1 %
8.	( 1)	39.773,00	Ars Technica	6.384.486,87	(7)	1,7 %
9.	( 4)	35.237,30	SETI.USA	3.360.431,42	(16)	1,5 %
10.	()	27.528,60	Teddies	3.914.804,28	(13)	1,2 %
11.	()	26.076,30	Czech National Team	4.055.580,22	(12)	1,1 %
12.	( 1)	25.780,80	BOINC Synergy	4.858.217,43	(11)	1,1 %
13.	( 1)	22.951,50	The Clangers	2.768.496,02	(21)	1,0 %
14.	()	22.323,40	Rosetta Serbia	22.323,43	(512)	0,9 %
15.	()	21.629,40	US-Distributed	5.967.057,40	(9)	0,9 %
More...

Teams Overall Top 15
pos		overall	team	daily		procent
1.	()	41.502.564,04	XtremeSystems	512.408,00	(1)	13,2 %
2.	()	40.685.619,90	Free-DC	257.067,00	(2)	13,0 %
3.	()	34.758.806,14	Dutch Power Cows	213.172,00	(3)	11,1 %
4.	()	17.691.050,44	TeAm AnandTech	117.111,00	(4)	5,6 %
5.	()	12.457.870,91	XPC	53.027,90	(6)	4,0 %
6.	()	6.614.062,20	Canada	60.565,80	(5)	2,1 %
7.	()	6.384.486,87	Ars Technica	39.773,00	(8)	2,0 %
8.	()	6.215.747,25	Phoenix Rising	11.598,50	(28)	2,0 %
9.	()	5.967.057,40	US-Distributed	21.629,40	(15)	1,9 %
10.	()	5.309.485,64	Housing and Food Services	14.428,00	(24)	1,7 %
11.	()	4.858.217,43	BOINC Synergy	25.780,80	(12)	1,5 %
12.	()	4.055.580,22	Czech National Team	26.076,30	(11)	1,3 %
13.	()	3.914.804,28	Teddies	27.528,60	(10)	1,2 %
14.	()	3.686.832,37	Team MacNN	49.614,30	(7)	1,2 %
15.	()	3.625.638,28	L'Alliance Francophone	21.495,70	(16)	1,2 %
More...

Mijlpalen
user	mijlpaal
B&B	100.000
Pepijn Dever	20.000
Zonk	15.000
flying_pizza	10.000
Roel	10.000
Snoepdoggy	2.000
Andromedanevel	1.000

When do we reach the 35.000.000?
We will reach this goal in 1 day.

When do we get them...
nobody

When do they get us...
nobody

New members
Com@Home
garwaiyau

Rosetta@home Links
Rosetta@home Homepage
Officiële stats
DPC Rosetta FAQ
DPCH Suggestiepagina
Bron

[Kristof]

Nieuws van David Baker in zijn journal:

CASP targets are continuing to come in, and we have more to do than ever--our "CASP control room" with Rhiju, Bin and others furiously going through targets, pieces of paper with various information on each of the targets floating around, etc. is quite a sight!

The structures of a few of the targets have been published now, but these are all in the "comparative modeling" category where copying a known structure gives a good solution already (we are trying to refine these starting models using the high resolution part of the the protocol running on rosetta@home). Calculations for these proteins didn't use rosetta@home as they are less time consuming. Our results are good compared to the automatic servers, but we won't know how they stack up compared to other participants until the meeting in November.

We did get some exciting news yesterday from an analogous prediction experiment/competition called CAPRI on protein-protein docking. For this problem, which consists of finding the lowest energy docked arrangement of two protein structures give the coordinates of the isolated proteins, our approach is very similar to that running on rosetta@home--there is an initial low resolution search followed by full atom refinement. Chu Wang, a graduate student in the group, made predictions for the most recent round of CAPRI, and they turn out to be the best made by any group:

http://capri.ebi.ac.uk/round10/R10_T26/ (scroll down to "medium predictions"; we are group 80).


Finally, to answer a question on the discussion boards, many proteins consist of multiple independently folded "domains". In many cases, it is possible to recognize from the amino acid sequence roughly where the boundaries between the domains are, and in these cases we carry out folding calculations separately on each domain. This in the end produces models for different parts of an amino acid sequence, and we then need to assemble these into one coherenet structure. For this we use a protocol again very similar to what you have been running, except that the only variation allowed is in the linker between the domains, typically around 10 residues, while the intradomain structure is kept fixed (this is quite analogous to the docking problem I mentioned above).

toon volledige bericht

[Bio1ogics]

* Bio1ogics heeft vandaag wat koetjes op werk van het gras moeten halen

Ik zit eraan te denken om thuis wat meer te grazen. Wat maakt de goedkoopste koe? (zonder electra kosten?)

[Mobster]

Da's een hele lap met tekst.

Kunnen we de boel niet even naar 250k tillen mensen?

@bovenbuurman. A bit outdated, maar ja
Voor 1000 euro zoveel mogelijk CPU kracht

[ Voor 41% gewijzigd door Mobster op 22-06-2006 15:58 ]

[Bio1ogics]

gaat lezen

Dank Mobster!

[MetalMike]

Mobster schreef op donderdag 22 juni 2006 @ 15:55:
Kunnen we de boel niet even naar 250k tillen mensen?

Eej, ik doe m'n best!

Als ik mijn koetjes nog harder uitknijp, dan veranderen ze in rundergehakt

[Anoniem: 143153]

MetalMike schreef op donderdag 22 juni 2006 @ 21:26:
[...]

Eej, ik doe m'n best!

Als ik mijn koetjes nog harder uitknijp, dan veranderen ze in rundergehakt

Je bent inderdaad zwaar hard bezig, sterk man!
Wat heb je zoal draaien?

* Anoniem: 143153 gaat zijn koetje nog wat vers gras en een red-bull geven voor hyperactieve crunchkracht